"truck idles fine, I can rev the piss out of it. but when I put it in gear it makes an engine knock sound"
Did maybe you have a [bearing in the transmission] go out and it's just happenstance that it coincides w/ the rebuild?
Please follow the others' advice first - this isn't meant to distract you from trying to troubleshoot, but bearings can fail and "suddenly" isn't outside of the realm of possibility.